Aging & Longevity

A Balanced Chromosomal Rearrangement Disrupting the Telomerase RNA Component Gene Causes Short Telomere-Mediated Pulmonary Fibrosis.

TL;DR

A familial balanced chromosomal translocation with a breakpoint within the non-coding TERC gene disrupts telomerase RNA and causes short telomere-mediated pulmonary fibrosis, representing a previously unrecognized structural cause of telomere biology disorders.

Key Findings

A balanced chromosomal translocation with a breakpoint within the TERC gene was identified as the cause of pulmonary fibrosis in a multi-generation family.

  • The translocation involved a chromosome 3 breakpoint within the non-coding telomerase RNA component (TERC) gene
  • The rearrangement disrupted the 451-nucleotide telomerase RNA
  • The translocation was familial and balanced (not associated with copy number change)
  • Optical genome mapping (OGM) was required to identify the structural rearrangement after exome sequencing failed to detect it

The affected family presented with a clinical triad of pulmonary fibrosis, microcephaly, and premature hair graying consistent with a telomere biology disorder.

  • Multiple family members were affected across generations
  • The proband underwent successful lung transplantation at age 49 after TBD diagnosis enabled a tailored protocol
  • Premature hair graying and microcephaly are recognized extrapulmonary features of telomere biology disorders
  • The family had been affected by PF prior to identification of the underlying genetic cause

Short telomeres were confirmed in affected family members using multiple complementary telomere length measurement methods.

  • Telomeric restriction fragment (TRF) analysis was used to measure telomere length
  • NanoTelSeq, a long-read Nanopore sequencing method for telomere analysis, was also employed
  • Both methods confirmed short telomeres in association with the TERC disruption
  • Exome sequencing (ES) alone was insufficient to identify the causative variant, requiring addition of OGM

Structural disruption of TERC by chromosomal rearrangement represents a previously unrecognized mutational mechanism causing telomere biology disorders.

  • Prior known TERC disease-causing variants were limited to splicing variants, single nucleotide substitutions, and insertion/deletion variants
  • This finding broadens the genetic landscape of TBD beyond previously recognized variant classes
  • The balanced nature of the translocation meant no net loss of chromosomal material, making it undetectable by standard copy-number-based analyses
  • Structural disruption of a non-coding RNA gene by balanced rearrangement is a novel disease mechanism for TBD

At least 30% of familial pulmonary fibrosis cases are attributed to telomere biology disorders, but TBD-associated PF remains underdiagnosed.

  • Underdiagnosis is attributed to unidentified disease-causing mutations and limited referral for telomere and genetic testing
  • The authors argue for routine telomere length measurement alongside comprehensive genomic testing in familial PF
  • Comprehensive genomic testing including OGM is needed to detect structural rearrangements missed by exome sequencing alone
  • Establishing a TBD diagnosis has direct clinical consequences, enabling a TBD-tailored transplantation protocol

Optical genome mapping (OGM) was essential for detecting the balanced translocation that disrupted TERC and was not identified by exome sequencing.

  • The study combined TRF analysis, NanoTelSeq, exome sequencing, and optical genome mapping in an integrated diagnostic approach
  • Exome sequencing did not identify the causative variant in this family
  • OGM successfully detected the balanced chromosomal rearrangement
  • The combination of telomere length testing and OGM was required to establish the diagnosis

What This Means

This research describes a family affected by lung scarring (pulmonary fibrosis), small head size, and early hair graying, caused by an unusual type of genetic change. Researchers found that a chromosomal rearrangement — where two chromosomes swap segments with each other in a balanced way — broke apart a critical gene called TERC. TERC provides the RNA blueprint for telomerase, the enzyme that maintains the protective caps (telomeres) at the ends of chromosomes. When TERC is disrupted, telomeres become abnormally short over time, eventually causing organ failure, most commonly in the lungs. This type of chromosomal swap is 'balanced,' meaning no genetic material is gained or lost, which is why standard genetic tests like exome sequencing missed it entirely — specialized imaging of the genome (optical genome mapping) was needed to find it. This research suggests that the spectrum of genetic changes that can cause telomere biology disorders (TBDs) is broader than previously understood, extending beyond the typical point mutations, small insertions or deletions, and splicing errors to include structural rearrangements of chromosomes. This matters because TBD-related pulmonary fibrosis is estimated to account for at least 30% of familial cases, yet many patients go undiagnosed. Missing the diagnosis means patients may not receive treatments or transplant protocols specifically tailored for TBD, which can affect outcomes — in this case, identifying the cause allowed the proband to undergo a successful lung transplant at age 49. The findings highlight the importance of measuring telomere length and using comprehensive genomic tools, including structural variant detection, in families with pulmonary fibrosis. Standard genetic panels or exome sequencing alone may miss causative variants like the one described here. Clinicians evaluating familial pulmonary fibrosis may need to consider a broader range of testing approaches to ensure patients with telomere biology disorders are correctly identified and can access appropriate care.

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Citation

Hourvitz N, Neustadter-Blackman M, Unterman A, Smoom R, Mory A, Lederman Nahemias H, et al.. (2026). A Balanced Chromosomal Rearrangement Disrupting the Telomerase RNA Component Gene Causes Short Telomere-Mediated Pulmonary Fibrosis.. International journal of molecular sciences. https://doi.org/10.3390/ijms27198667