Gut Microbiome

Antibiotic use and immune-related adverse events in patients treated with immune checkpoint inhibitors: analysis of the FAERS database.

TL;DR

Antibiotic co-reporting during ICI therapy is associated with a higher reported frequency of irAEs (OR=1.17) and a shorter median time to first reported irAE (31 vs. 42 days) among patients who experienced irAEs, based on analysis of the FAERS database from 2014 to Q4 2024.

Key Findings

Antibiotic use was associated with a significantly higher reported frequency risk of immune-related adverse events in ICI-treated patients.

  • OR = 1.17; 95% CI: 1.12–1.23; FDR < 0.001
  • Analysis included 155,157 patients treated with ICIs, of whom 9,518 (6.1%) received antibiotic therapy
  • Multivariable logistic regression was used to evaluate the association
  • Data were drawn from the FAERS database covering 2014 to Q4 2024

The strongest antibiotic-irAE associations were observed for specific antibiotic classes including fluoroquinolones, sulfonamides, penicillin, macrolides, cephalosporins, and monobactams.

  • These six antibiotic categories showed the strongest co-reporting associations with irAEs
  • Associations were evaluated across different antibiotic categories using multivariable logistic regression
  • Specific OR values for individual antibiotic classes were not reported in the abstract

Antibiotic co-reporting was most strongly associated with higher reported frequency of irAEs in patients receiving PD-L1 inhibitors.

  • OR = 1.51; 95% CI: 1.39–1.65; FDR < 0.001 for PD-L1 inhibitor patients
  • This association was stronger than the overall estimate (OR = 1.17) observed across all ICI types
  • Analyses were stratified by ICI regimen type (PD-1 inhibitors, PD-L1 inhibitors, etc.)

Among patients who reported irAEs, the median time to first reported irAE was shorter in the antibiotic co-reporting group than in the non-co-reporting group.

  • Median time to first reported irAE: 31 days (IQR: 9–105) in the antibiotic co-reporting group vs. 42 days (IQR: 14–122) in the non-co-reporting group
  • Wilcoxon rank-sum test P < 0.001
  • This was an exploratory descriptive analysis restricted to patients who reported irAEs
  • The authors note the unsuitability of spontaneous reporting data for formal time-to-event analysis

The pattern of shorter time to first reported irAE with antibiotic co-reporting was most evident in patients receiving PD-1 inhibitors.

  • Stratified analysis by ICI type revealed this timing pattern was most pronounced in the PD-1 inhibitor subgroup
  • Results were based on descriptive analysis, not formal survival or time-to-event modeling
  • Specific median values for PD-1 inhibitor subgroup were not reported in the abstract

The FAERS database analysis has several inherent limitations that preclude causal inference.

  • The database does not allow determination of the temporal sequence of antibiotic and ICI exposure
  • Limitations include unmeasured confounding and reporting artifacts
  • Spontaneous reporting data are unsuitable for formal time-to-event analysis
  • The authors call for prospective cohort studies with detailed medication timing, clinical phenotyping, and microbiome profiling to validate these signals

What This Means

This research suggests that cancer patients who take antibiotics while receiving immune checkpoint inhibitor (ICI) therapy — a type of cancer immunotherapy — may be more likely to experience immune-related side effects (called irAEs) compared to those who do not take antibiotics. Analyzing a large U.S. database of adverse drug event reports (over 155,000 ICI-treated patients), the researchers found that antibiotic users had about 17% higher odds of having an immune-related side effect reported, with the association being particularly strong for patients receiving PD-L1 inhibitors (51% higher odds). Certain antibiotic classes — including fluoroquinolones, sulfonamides, penicillin, macrolides, cephalosporins, and monobactams — showed the strongest links to these side effects. Among patients who did experience immune-related side effects, those who also took antibiotics appeared to develop these side effects sooner — a median of 31 days compared to 42 days in those without antibiotic co-use. This timing pattern was most pronounced in patients receiving PD-1 inhibitors. The researchers suggest these findings may be related to antibiotics disrupting the gut microbiome, which is known to influence how the immune system responds to ICI therapy. However, this research suggests these are signals requiring further investigation rather than definitive conclusions. The study relied on a spontaneous reporting database, which cannot confirm the order in which antibiotics and ICIs were given, cannot rule out other explanations (confounding factors), and is not designed for formal analysis of timing. The authors call for carefully designed prospective studies that track medication timing, patient characteristics, and gut microbiome changes to confirm whether antibiotics truly cause earlier or more frequent immune-related side effects in ICI-treated patients.

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Citation

Yu J, Li Q, Zou S, Rong Y, Zhang Y, Chen C. (2026). Antibiotic use and immune-related adverse events in patients treated with immune checkpoint inhibitors: analysis of the FAERS database.. Frontiers in immunology. https://doi.org/10.3389/fimmu.2026.1733373