In this pilot study, there were no significant differences in stool microbiome alpha diversity between children with CF treated with ETI, children with CF not treated with ETI, and healthy sibling controls, though alpha diversity showed a negative trend with duration of ETI therapy for both bacteriome and mycobiome.
Key Findings
Results
No significant differences in alpha diversity were found between children with CF treated with ETI, children with CF not treated with ETI, and healthy sibling controls for both bacteriome and mycobiome.
Study was prospective and observational in design
Children aged 2-17 years with CF were enrolled
ETI-treated group had received the therapy for at least two months
Healthy siblings were included as controls
No significant differences in demographics were observed between the groups
Results
Alpha diversity showed a negative trend with the duration of ETI therapy for both bacteriome and mycobiome in children with CF treated with ETI.
This trend was observed in the ETI-treated CF group specifically
The trend was present for both bacterial (bacteriome) and fungal (mycobiome) components of the stool microbiome
The finding is described as a trend rather than a statistically significant result
Authors noted this as a preliminary finding requiring confirmation in future studies
Results
Firmicutes and Proteobacteria were the most abundant and core bacterial phyla across all samples regardless of disease status or treatment group.
These phyla were identified as core members across all samples
The finding held regardless of CF disease status or ETI treatment
Healthy sibling controls also shared these dominant phyla
This suggests these phyla represent a consistent feature of the gut bacteriome in this pediatric population
Results
Ascomycota and Basidiomycota were the most abundant and core fungal phyla across all samples regardless of disease status or treatment group.
These fungal phyla were identified as core members of the mycobiome across all samples
The finding held regardless of CF disease status or ETI treatment
Both CF groups and healthy sibling controls shared these dominant fungal phyla
This pattern mirrors findings for bacterial phyla in terms of consistency across groups
Background
Prior studies in people with CF demonstrated a positive impact of ivacaftor on the stool microbiome, but studies evaluating the impact of ETI on gut dysbiosis are limited.
This study was designed to address the gap in knowledge regarding ETI's effect on gut dysbiosis
ETI combines elexacaftor, tezacaftor, and ivacaftor
The study is described as a pilot study given the limited prior literature on ETI and gut microbiome
Authors concluded future studies are needed to confirm or refute their preliminary findings
Sankararaman S, Liu R, Sun X, Retuerto M, Schindler T, Roesch E, et al.. (2026). Comparison of Stool Microbiome in Children with Cystic Fibrosis Treated with and Without Elexacaftor-Tezacaftor-Ivacaftor-A Pilot Study.. International journal of molecular sciences. https://doi.org/10.3390/ijms27020814