Gut Microbiome

Dolutegravir restores gut microbiota in late-stage HIV-1 unlike darunavir: an open-label, randomized clinical trial.

TL;DR

Dolutegravir-based therapy restores the gut microbiota more effectively than darunavir/ritonavir in patients who present late with HIV, with changes associated with reduced inflammation and lower immune activation.

Key Findings

Both dolutegravir and darunavir/ritonavir regimens achieved similar HIV-1 suppression rates and CD4+ T cell recovery over two years.

  • 88 antiretroviral-naïve individuals with advanced HIV-1 infection were enrolled in a multicenter, open-label, randomized clinical trial (NCT02337322)
  • Participants had a median CD4+ T cell count of 34 cells/mm3 at baseline
  • Participants were randomized 1:1 to lamivudine/abacavir plus either dolutegravir or ritonavir-boosted darunavir
  • Follow-up duration was 2 years
  • HIV-1 suppression rates and CD4+ T cell recovery were similar between the two treatment groups

Dolutegravir-based therapy led to increased gut microbial richness and diversity compared to darunavir/ritonavir.

  • Treatment with dolutegravir resulted in increased gut microbial richness and diversity
  • These changes did not occur with darunavir/ritonavir treatment
  • The trial enrolled individuals with late-stage HIV-1 infection defined by median CD4+ T cells of 34 cells/mm3
  • Microbial diversity changes were observed over the 2-year follow-up period

Dolutegravir treatment led to enrichment of specific microbial taxa and metabolic pathways not observed with darunavir/ritonavir.

  • Specific microbial taxa were enriched in the dolutegravir group
  • Specific metabolic pathways were also enriched in the dolutegravir group
  • These enrichments were not observed in the darunavir/ritonavir group
  • The changes occurred in the context of late-stage HIV-1 infection with advanced immunosuppression

Microbiota changes in the dolutegravir group were associated with reduced inflammation and lower immune activation.

  • Increased gut microbial richness and diversity in the dolutegravir group were associated with reduced inflammation
  • These changes were also associated with lower immune activation
  • Reduced inflammation and immune activation did not occur with darunavir/ritonavir treatment
  • Late presentation of HIV-1 infection is linked to excess inflammation, immune activation, and increased morbidity and mortality

After two years, participants on dolutegravir-based therapy had gut microbiota profiles more closely resembling those of people without HIV compared to individuals taking darunavir/ritonavir.

  • The comparison was made after 2 years of antiretroviral therapy
  • Dolutegravir-treated participants' microbiota profiles more closely resembled HIV-negative individuals
  • Darunavir/ritonavir-treated participants did not show comparable normalization of gut microbiota
  • This finding suggests that the choice of antiretroviral regimen influences the degree of gut microbiota restoration

Late presentation of HIV-1 infection is linked to gut dysbiosis, impaired immune reconstitution, excess inflammation, immune activation, and increased morbidity and mortality.

  • This relationship between late HIV presentation and gut dysbiosis provided the rationale for the study
  • It was unclear prior to this trial whether antiretroviral therapy initiation could reverse HIV-associated gut dysbiosis
  • It was also unclear whether specific antiretroviral regimens would be more effective in restoring gut microbiota than others
  • The study enrolled individuals with advanced HIV-1 infection with a median CD4+ T cell count of 34 cells/mm3

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Citation

Català-Moll F, Blázquez-Bondia C, Farré-Badia J, Torres F, Manzardo C, Bonfill E, et al.. (2026). Dolutegravir restores gut microbiota in late-stage HIV-1 unlike darunavir: an open-label, randomized clinical trial.. Nature communications. https://doi.org/10.1038/s41467-026-69846-7