Genetic association and computational analysis of CYP2R1 gene polymorphisms rs2060793 and rs12794714 with vitamin D deficiency and acute myocardial infarction in the Bangladeshi population: A case control study.
CYP2R1 rs2060793 polymorphism is significantly associated with increased AMI risk and lower vitamin D levels in a Bangladeshi population, while rs12794714 showed no significant association with AMI.
Key Findings
Results
AMI patients had significantly lower serum 25-hydroxyvitamin D3 concentrations compared to controls.
AMI patients exhibited mean vitamin D levels of 23.92 ± 0.94 ng/mL versus 30.3 ± 0.86 ng/mL in controls.
The difference was statistically significant (p < 0.0001).
Serum 25-hydroxyvitamin D3 levels were quantified by HPLC.
Study included 251 AMI patients and 251 age- and sex-matched controls (n = 502 total).
Results
The CYP2R1 rs2060793 TC and CC genotypes were each associated with significantly increased AMI risk compared to the TT genotype.
TC genotype: OR = 2.49 (95% CI: 1.34–4.63).
CC genotype: OR = 2.59 (95% CI: 1.37–4.90).
Overall genotypic association p = 0.0064.
Genotyping was performed using PCR-RFLP methodology.
Results
The dominant model combining TC and CC genotypes of rs2060793 confirmed a significant association with AMI risk.
Dominant model (TC + CC vs. TT): OR = 2.53 (95% CI: 1.39–4.61), p = 0.0016.
This model aggregates carriers of at least one C allele versus homozygous TT reference genotype.
The finding further confirmed the susceptibility conferred by the C allele of rs2060793.
Results
CYP2R1 rs12794714 showed no significant association with AMI risk in the Bangladeshi population.
Unlike rs2060793, rs12794714 did not demonstrate a statistically significant association with AMI.
Both variants were genotyped in the same cohort of 502 participants using PCR-RFLP.
The lack of association with rs12794714 contrasts with findings for rs2060793 in this population.
Results
The association between rs2060793 and AMI was significant in males but not in females in stratified analysis.
Sex-stratified analysis revealed that rs2060793 was significantly linked to AMI risk specifically in males.
No significant association was observed between rs2060793 and AMI in females.
This sex-specific difference suggests potential effect modification by sex for this variant.
Results
Both CYP2R1 variants (rs2060793 and rs12794714) were associated with increased AMI risk in individuals aged ≤60 years but not in those older than 60 years.
Age-stratified analysis showed significant associations for both rs2060793 and rs12794714 in the ≤60 years subgroup.
Neither variant was significantly associated with AMI in participants aged >60 years.
This age-dependent pattern suggests the genetic effect may be more relevant in younger individuals.
Results
Bioinformatic and molecular docking analyses demonstrated potential regulatory effects of the two CYP2R1 variants on CYP2R1 gene function.
Analyses used RegulomeDB, JASPAR, HADDOCK 2.4, and DNAproDB platforms.
Results indicated potential regulatory effects of rs2060793 and rs12794714 on CYP2R1 function.
These computational analyses provide mechanistic context for how the variants may influence vitamin D metabolism.
The CYP2R1 gene encodes the key 25-hydroxylase enzyme responsible for converting vitamin D to its principal circulating metabolite, 25-hydroxyvitamin D.
Methods
The study population consisted of Bangladeshi participants representing a South Asian cohort that had not been well characterized for CYP2R1 polymorphism effects on AMI.
502 total participants: 251 AMI patients and 251 age- and sex-matched controls.
The study was designed as a case-control study.
Genomic DNA was extracted and genotyped using PCR-RFLP.
The authors note that the influence of CYP2R1 polymorphisms on AMI susceptibility in South Asian populations had not been well characterized prior to this study.
What This Means
This research suggests that a specific genetic variant in the CYP2R1 gene — a gene that controls how the body converts vitamin D into its active form — is linked to a higher risk of heart attacks (acute myocardial infarction, or AMI) in people from Bangladesh. The study compared 251 heart attack patients to 251 healthy matched controls and found that patients had notably lower vitamin D levels in their blood. Individuals carrying certain versions (TC or CC genotypes) of the rs2060793 variant in the CYP2R1 gene were approximately 2.5 times more likely to have had a heart attack compared to those with the TT version. A second variant studied, rs12794714, did not show the same overall association with heart attack risk.
The research also found that these genetic associations were not uniform across all groups. The rs2060793 variant was significantly associated with heart attack risk in men but not women, and both variants showed stronger associations in people aged 60 or under compared to those older than 60. Computer-based analyses further suggested that these genetic variants may affect how the CYP2R1 gene functions, potentially altering the body's ability to produce adequate levels of active vitamin D.
This research suggests that genetic differences in vitamin D metabolism may play a role in heart attack susceptibility, particularly in South Asian populations that have been understudied in this context. The findings highlight a potential interplay between genetics and vitamin D levels in heart disease risk, which could have implications for understanding why certain individuals or populations may be more vulnerable to heart attacks. Further research in larger and more diverse populations would be needed to confirm and expand on these findings.
Akter S, Ibrahim M, Mahmud Z, Tamanna S, Shawon M, Ansari F, et al.. (2026). Genetic association and computational analysis of CYP2R1 gene polymorphisms rs2060793 and rs12794714 with vitamin D deficiency and acute myocardial infarction in the Bangladeshi population: A case control study.. PloS one. https://doi.org/10.1371/journal.pone.0350994