A meta-analysis of 10,878 gut microbiome samples across 27 countries identified core phyla (Firmicutes, Bacteroidetes, and Proteobacteria) shared globally alongside unique regional microbiome signatures, with Actinobacteria declining and Bacteroidetes increasing with age across all continents.
Key Findings
Results
Firmicutes, Bacteroidetes, and Proteobacteria constitute core phyla across all geographic regions analyzed.
Analysis included 10,878 samples across North America, Europe, Africa, Asia, and Oceania
27 countries were represented in the dataset
16S rRNA gut microbiome sequencing data was used for all samples
These three phyla were consistently identified regardless of geographic region
Results
Lachnospiraceae was identified as a core family present across geographic regions, with differing predominance of other top families comprising unique regional microbiome signatures.
Different regions showed distinct predominant families alongside the shared core family Lachnospiraceae
Regional uniqueness was observed across North America, Europe, Africa, Asia, and Oceania
Countries also differed in their relative abundances of Bifidobacterium, Faecalibacterium, Lactobacillus, and Bacteroides
Results
Proteobacteria and Actinobacteria were the most abundant phyla in the youngest age group (neonate to age 17, AG01).
Three age groups were analyzed: AG01 (neonate to age 17), AG02 (ages 18 to 64), and AG03 (age 65 and above)
Proteobacteria and Actinobacteria predominance was specific to AG01 compared to older age groups
This pattern was assessed across multiple continents
Results
Actinobacteria abundance declined with increasing age across all continents.
The decline in Actinobacteria was observed consistently across all continental regions studied
The trend spanned all three age groups: AG01 (neonate–17), AG02 (18–64), and AG03 (65+)
This represents one of the most consistent age-related microbiome patterns identified in the meta-analysis
Results
The relative abundance of Bacteroidetes increased between the youngest age group (AG01) and the adult age group (AG02).
AG01 comprised neonates through age 17; AG02 comprised ages 18 to 64
This increase in Bacteroidetes was observed as part of age-related microbiome compositional shifts
The pattern complements the finding of Proteobacteria and Actinobacteria predominance in AG01
Results
Enrichment of asthma-associated Enterobacteriaceae in the youngest age group (AG01) was highest in North America, followed by Europe and then Asia.
Enterobacteriaceae enrichment in AG01 was specifically noted in the context of asthma association
A clear geographic gradient was observed: North America > Europe > Asia for this enrichment in AG01
This finding was discussed in the context of clinical health trends including asthma prevalence
Methods
The meta-analysis systematically integrated heterogeneous gut microbiome studies using a standardized approach to enable cross-geographic and cross-age comparisons.
Prior analyses were described as 'heterogeneous in methodology, precluding broader conclusions'
The dataset spanned 27 countries and 5 continental regions: North America, Europe, Africa, Asia, and Oceania
A total of 10,878 samples were included
16S rRNA sequencing data was used as the common methodological basis
Huang S, Chaudhari D, Shukla R, Kanani P, Zeidan R, Lin Y, et al.. (2026). Global Microbiome: Core and Unique Signatures Across Diverse Populations.. International journal of molecular sciences. https://doi.org/10.3390/ijms27041776