Gut microbial O-demethylation is a significant determinant of etoposide metabolism and disposition, increasing systemic etoposide exposure 1.9-fold and decreasing its O-demethylated metabolite M1 exposure 3.7-fold when gut bacteria are depleted with antibiotics.
Key Findings
Results
Gut microbial O-demethylation was detected for 35 of 64 clinically used oral drugs containing methoxylated aromatics.
64 clinically used oral drugs containing one or more methoxylated aromatics were screened for gut microbial O-demethylation using high-resolution mass spectrometry (HRMS).
Individual drugs were incubated with mouse cecal contents.
O-demethylation was identified by detection of metabolites with a mass difference of -14 and its multiples.
35 of the tested drugs, including the anticancer agent etoposide, showed O-demethylated metabolites.
Results
The O-demethylated metabolite (M1) of etoposide was confirmed to be etoposide catechol.
Confirmation was achieved using both HRMS and proton nuclear magnetic resonance (NMR) spectroscopy.
Etoposide was used as the model drug for in-depth characterization of gut microbial O-demethylation.
Results
Seven previously unknown gut bacterial species with etoposide O-demethylating activity were identified.
An in-house collection of 56 gut bacteria was tested individually for etoposide O-demethylating activity.
Seven species were identified as exhibiting etoposide O-demethylating activity, all previously unreported for this activity.
Results
Etoposide catechol (M1) is more genotoxic to myeloid cells than the parent etoposide when orally administered to mice.
M1 was demonstrated to be more genotoxic to myeloid cells upon oral administration in mice.
This finding suggests the gut microbiota may contribute to the secondary genotoxicity (increased risk of acute myeloid leukemia) associated with etoposide anticancer therapy via O-demethylation.
Etoposide anticancer therapy has been previously associated with an increased risk of acute myeloid leukemia.
Results
Etoposide catechol (M1) is less cytotoxic against MCF-7 and HeLa cancer cells than the parent etoposide.
Cytotoxicity comparisons were made between M1 and parent etoposide in MCF-7 (breast cancer) and HeLa (cervical cancer) cell lines.
M1 showed lower cytotoxicity than etoposide in both cancer cell lines tested, suggesting O-demethylation may reduce anticancer efficacy.
Results
Antibiotic treatment of mice increased systemic exposure to etoposide 1.9-fold and decreased exposure to M1 by 3.7-fold.
Comparative pharmacokinetic analysis was performed in control versus antibiotic-treated mice following oral etoposide administration.
Systemic exposure to etoposide increased 1.9-fold in antibiotic-treated mice compared to control mice.
M1 exposure decreased 3.7-fold in antibiotic-treated mice compared to control mice.
These results indicate that gut microbial O-demethylation is a significant determinant of etoposide metabolism and disposition.
Tripathi A, Kyawt T, Shin J, Won K, Armstrong A, Ilktach G, et al.. (2026). Gut bacterial O-demethylation modulates systemic exposure to oral etoposide.. Gut microbes. https://doi.org/10.1080/19490976.2026.2628358