Gut Microbiome

Gut bacterial O-demethylation modulates systemic exposure to oral etoposide.

TL;DR

Gut microbial O-demethylation is a significant determinant of etoposide metabolism and disposition, increasing systemic etoposide exposure 1.9-fold and decreasing its O-demethylated metabolite M1 exposure 3.7-fold when gut bacteria are depleted with antibiotics.

Key Findings

Gut microbial O-demethylation was detected for 35 of 64 clinically used oral drugs containing methoxylated aromatics.

  • 64 clinically used oral drugs containing one or more methoxylated aromatics were screened for gut microbial O-demethylation using high-resolution mass spectrometry (HRMS).
  • Individual drugs were incubated with mouse cecal contents.
  • O-demethylation was identified by detection of metabolites with a mass difference of -14 and its multiples.
  • 35 of the tested drugs, including the anticancer agent etoposide, showed O-demethylated metabolites.

The O-demethylated metabolite (M1) of etoposide was confirmed to be etoposide catechol.

  • Confirmation was achieved using both HRMS and proton nuclear magnetic resonance (NMR) spectroscopy.
  • Etoposide was used as the model drug for in-depth characterization of gut microbial O-demethylation.

Seven previously unknown gut bacterial species with etoposide O-demethylating activity were identified.

  • An in-house collection of 56 gut bacteria was tested individually for etoposide O-demethylating activity.
  • Seven species were identified as exhibiting etoposide O-demethylating activity, all previously unreported for this activity.

Etoposide catechol (M1) is more genotoxic to myeloid cells than the parent etoposide when orally administered to mice.

  • M1 was demonstrated to be more genotoxic to myeloid cells upon oral administration in mice.
  • This finding suggests the gut microbiota may contribute to the secondary genotoxicity (increased risk of acute myeloid leukemia) associated with etoposide anticancer therapy via O-demethylation.
  • Etoposide anticancer therapy has been previously associated with an increased risk of acute myeloid leukemia.

Etoposide catechol (M1) is less cytotoxic against MCF-7 and HeLa cancer cells than the parent etoposide.

  • Cytotoxicity comparisons were made between M1 and parent etoposide in MCF-7 (breast cancer) and HeLa (cervical cancer) cell lines.
  • M1 showed lower cytotoxicity than etoposide in both cancer cell lines tested, suggesting O-demethylation may reduce anticancer efficacy.

Antibiotic treatment of mice increased systemic exposure to etoposide 1.9-fold and decreased exposure to M1 by 3.7-fold.

  • Comparative pharmacokinetic analysis was performed in control versus antibiotic-treated mice following oral etoposide administration.
  • Systemic exposure to etoposide increased 1.9-fold in antibiotic-treated mice compared to control mice.
  • M1 exposure decreased 3.7-fold in antibiotic-treated mice compared to control mice.
  • These results indicate that gut microbial O-demethylation is a significant determinant of etoposide metabolism and disposition.

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Citation

Tripathi A, Kyawt T, Shin J, Won K, Armstrong A, Ilktach G, et al.. (2026). Gut bacterial O-demethylation modulates systemic exposure to oral etoposide.. Gut microbes. https://doi.org/10.1080/19490976.2026.2628358