Gut Microbiome

High-Salt Diet Promotes Kidney Stone Formation Through Gut Microbiota-Dependent Inflammatory Pathways.

TL;DR

High salt intake promotes calcium oxalate kidney stone formation through a gut microbiota-TMA/TMAO-NF-κB axis, confirmed by clinical association, animal models, fecal microbiota transplantation, and in vitro experiments.

Key Findings

High salt intake was independently associated with calcium oxalate kidney stones in a clinical cohort after multivariable adjustment.

  • Clinical cohort included 153 subjects.
  • Adjusted odds ratio for CaOx stones with high salt intake was 2.52 (95% CI 1.10–5.94, p = 0.031).
  • The association remained significant after multivariable adjustment, indicating independence from other confounders.

The gut microbiota of high-salt diet stone formers showed enrichment of inflammation-associated bacteria and specific inflammatory signaling pathways.

  • Microbiota of high-salt diet stone formers was enriched for inflammation-associated bacteria.
  • Enriched pathways included NF-κB, tight junction, and sodium-calcium reabsorption pathways.
  • This pattern was identified in the clinical cohort participants.

A one-month high-salt diet in C57BL/6J mice disrupted intestinal barrier integrity, induced renal inflammation, and increased calcium oxalate crystal deposition.

  • Mouse model used C57BL/6J mice on a high-salt diet for one month.
  • Renal inflammation was characterized by elevated TNF-α, IL-6, and IL-1β.
  • Intestinal barrier integrity was disrupted alongside increased CaOx crystal deposition in the kidneys.

16S rRNA sequencing revealed depletion of beneficial bacterial genera and enrichment of TMA-producing bacteria in high-salt diet mice.

  • Beneficial genera depleted included Akkermansia and Bifidobacterium.
  • TMA-producing bacteria were enriched in the gut microbiota of high-salt diet mice.
  • Sequencing method used was 16S rRNA sequencing.

High-salt diet mice showed elevated cecal TMA and plasma TMAO levels alongside reduced urinary TMA and TMAO, indicating impaired renal metabolite clearance.

  • Cecal TMA concentrations were elevated in high-salt diet mice.
  • Plasma TMAO levels were elevated in high-salt diet mice.
  • Urinary TMA and TMAO were reduced, suggesting impaired renal clearance of these metabolites rather than simply increased production alone.

Fecal microbiota transplantation from high-salt diet donor mice reproduced elevated TMAO, renal inflammation, and crystal deposition in recipient mice, confirming a causal role for gut microbiota.

  • Recipient mice received fecal microbiota transplantation (FMT) from high-salt diet donors.
  • FMT recipients exhibited elevated plasma TMAO levels.
  • FMT recipients developed renal inflammation and increased CaOx crystal deposition, mirroring the high-salt diet phenotype.
  • This experiment was described as confirming 'a causal role for the gut microbiota.'

TMA disrupted tight junction proteins in Caco-2 intestinal epithelial cells in vitro, an effect reversed by the NF-κB inhibitor QNZ.

  • Experiments were conducted in Caco-2 intestinal epithelial cells.
  • TMA treatment disrupted tight junction proteins, indicating impaired intestinal barrier function.
  • The NF-κB inhibitor QNZ reversed TMA-induced tight junction disruption.

TMAO activated NF-κB signaling and increased CaOx crystal adhesion in HK-2 renal tubular cells in vitro, effects reversed by the NF-κB inhibitor QNZ.

  • Experiments were conducted in HK-2 renal tubular cells.
  • TMAO treatment activated NF-κB signaling in renal tubular cells.
  • TMAO increased CaOx crystal adhesion to HK-2 cells.
  • Both effects were reversed by the NF-κB inhibitor QNZ, implicating NF-κB as a key downstream mediator.

What This Means

This research suggests that eating too much salt increases the risk of calcium oxalate kidney stones not only by raising calcium in the urine, but also by disrupting the community of bacteria living in the gut. In both a group of 153 people and in mouse experiments, high salt intake was linked to shifts in gut bacteria — specifically, a loss of beneficial bacteria like Akkermansia and Bifidobacterium and a rise in bacteria that produce a compound called TMA (trimethylamine). TMA and its derivative TMAO (trimethylamine N-oxide) then appear to damage the gut lining, promote kidney inflammation, and make it easier for kidney stone crystals to stick to kidney cells. The study used multiple lines of evidence to support this gut-kidney connection. Mice fed a high-salt diet for one month developed gut barrier damage, kidney inflammation, and more kidney stone crystal deposits. Crucially, when healthy mice received gut bacteria transplanted from high-salt diet mice, they also developed elevated TMAO levels, kidney inflammation, and crystal deposits — even without being on a high-salt diet themselves. In laboratory cell experiments, adding TMAO to kidney cells switched on an inflammatory signal called NF-κB and made crystals adhere more readily; blocking NF-κB reversed these effects. This research suggests that the harmful effects of high salt on kidney stone risk involve a chain of events: salt disrupts gut bacteria → disrupted bacteria produce more TMA/TMAO → TMAO inflames the kidneys via NF-κB → inflamed kidneys become more prone to crystal buildup. These findings open potential avenues for addressing kidney stone risk by targeting gut bacteria or the TMA/TMAO pathway, in addition to the standard advice of reducing salt intake.

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Citation

Yuan C, Wang M, Yuan Y, Jin X, Wang K. (2026). High-Salt Diet Promotes Kidney Stone Formation Through Gut Microbiota-Dependent Inflammatory Pathways.. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. https://doi.org/10.1096/fj.202503466R