Integrated transcriptomic profiling of programmed cell death patterns unveils macrophage-hepatocyte crosstalk via THBS1-CD47 axis in hepatic ischemia-reperfusion injury.
Xie M, Zhang C, et al. • Frontiers in immunology • 2026
The THBS1-CD47 axis drives macrophage-hepatocyte crosstalk to exacerbate apoptosis by inhibiting PI3K-AKT-NF-κB signaling in hepatic ischemia-reperfusion injury.
Key Findings
Results
Bulk transcriptomic analysis identified 25 differentially expressed programmed cell death-related genes (DE-PCDRGs) consistently upregulated in HIRI samples.
Data were retrieved from GEO datasets GSE151648, GSE14951, GSE12720, and GSE171539
Functional annotation of these 25 DE-PCDRGs was performed to characterize their roles in HIRI pathogenesis
These genes were identified from bulk transcriptomic analysis of HIRI versus non-HIRI samples
Results
Machine learning algorithms identified 5 hub DE-PCDRGs (THBS1, MAP1LC3B, PPP1R15A, CXCL8, ZC3H12A) closely related to HIRI.
The 5 hub genes were selected from the 25 DE-PCDRGs using machine learning approaches
These hub genes formed a risk prediction model that effectively classified patients into high-risk and low-risk groups
Hub genes showed elevated expression in the high-risk group compared to the low-risk group
Results
High-risk HIRI patients showed pronounced enrichment of 5 specific programmed cell death patterns: anoikis, immunogenic cell death, NETosis, netotic cell death, and pyroptosis.
These 5 PCD patterns were differentially enriched between high-risk and low-risk groups defined by the prediction model
The enrichment of these PCD patterns was associated with the elevated expression of the 5 hub DE-PCDRGs
Results
Single-cell transcriptomic analysis uncovered 19 diverse PCD patterns in HIRI samples and identified 12 distinct PCD patterns within the HIRI sample microenvironment.
Single-cell data from dataset GSE171539 was used for this analysis
Spatial validation confirmed the expression of the 5 hub DE-PCDRGs at the single-cell level
Single-cell analysis validated the hub DE-PCDRGs identified from bulk transcriptomic analysis
Results
The HIRI animal model confirmed occurrence of apoptosis in liver tissue and upregulation of THBS1 specifically in macrophages.
In vivo experiments using a HIRI animal model were used for validation
THBS1 upregulation was localized to macrophages rather than other liver cell types
Apoptosis was confirmed as a pathological feature of HIRI liver tissue in vivo
Results
Macrophage-derived THBS1 directly engaged hepatocyte CD47, suppressing the PI3K-AKT-NF-κB signaling pathway and promoting apoptosis.
Demonstrated through in vitro co-culture experiments of macrophages and hepatocytes
THBS1-CD47 interaction was identified as the mechanistic link between macrophage-hepatocyte crosstalk and apoptosis
Inhibition of the PI3K-AKT-NF-κB signaling pathway was identified as the downstream mechanism by which THBS1-CD47 promotes apoptosis
These findings mechanistically linked the THBS1-CD47 axis to apoptosis-exacerbated liver injury
Conclusions
The study identified heterogeneous programmed cell death patterns as a key pathological process in HIRI, with THBS1-CD47 nominated as a promising therapeutic candidate target.
The integrated analysis combined bulk transcriptomics, single-cell transcriptomics, and experimental validation
THBS1-CD47 axis was identified as a mechanistic driver of macrophage-hepatocyte crosstalk in HIRI
Results extend current understanding of HIRI pathogenesis relevant to post-transplant complications
What This Means
This research suggests that liver damage caused by ischemia-reperfusion injury (when blood flow is cut off and then restored, as happens during liver transplantation) involves a complex interplay between different types of programmed cell death. By analyzing gene expression data from multiple patient datasets and using machine learning, the researchers identified 5 key genes that can predict how severely a patient will be affected, and found that high-risk patients show activation of specific cell death programs including pyroptosis and NETosis. The study also found that immune cells called macrophages play a central role in worsening the injury by releasing a protein called THBS1 that binds to a receptor (CD47) on liver cells, triggering a chain of molecular signals that ultimately causes liver cell death.
The researchers confirmed these findings both in animal models and in laboratory cell culture experiments. When macrophages and liver cells were grown together, the THBS1 from macrophages binding to CD47 on liver cells switched off a protective signaling pathway (PI3K-AKT-NF-κB), making the liver cells more likely to undergo apoptosis (a form of programmed cell death). This communication between macrophages and liver cells therefore amplifies the damage during ischemia-reperfusion injury.
This research suggests that the THBS1-CD47 interaction could be a target for new treatments to reduce liver damage in transplant patients. By blocking this communication pathway between macrophages and liver cells, it may be possible to preserve more liver tissue during and after transplantation, potentially improving patient outcomes. The study also provides a gene-based risk prediction model that could help identify patients at higher risk of severe injury.
Xie M, Zhang C, Zhu L, Pei Y, Liang C, Fu L, et al.. (2026). Integrated transcriptomic profiling of programmed cell death patterns unveils macrophage-hepatocyte crosstalk via THBS1-CD47 axis in hepatic ischemia-reperfusion injury.. Frontiers in immunology. https://doi.org/10.3389/fimmu.2026.1769849