Gut Microbiome

Melatonin Biosynthesis, Receptors, and the Microbiota-Tryptophan-Melatonin Axis: A Shared Dysbiosis Signature Across Cardiac Arrhythmias, Epilepsy, Malignant Proliferation, and Cognitive Trajectories.

TL;DR

A unifying microbiota-tryptophan-melatonin axis plausibly integrates circadian, electrophysiologic, and immune-oncologic phenotypes across cardiac arrhythmias, epilepsy, malignant proliferation, and cognitive trajectories, with moderate-to-severe dysbiosis observed across all three disease cohorts.

Key Findings

All three disease cohorts demonstrated moderate-to-severe dysbiosis with reduced alpha-diversity and shifted beta-diversity structure.

  • The study enrolled cardiac arrhythmia (n=111; ages 46-75), epilepsy (n=77; ages 20-59), and stage III-IV solid cancer (ages 25-79) cohorts
  • Total study population across four prospectively enrolled clinical cohorts was n=577
  • Dysbiosis was characterized by reduced alpha-diversity and shifted beta-structure across all disease groups
  • Profiling was performed using stool 16S rRNA sequencing, SCFA measurements, and circulating melatonin/urinary 6-sulfatoxymelatonin

The core dysbiosis signature across disease cohorts implicated tryptophan-active taxa and depletion of SCFA-producing commensals.

  • Tryptophan-active taxa implicated included Bacteroides/Clostridiales proteolysis and indolic conversions
  • Depleted SCFA-forward commensals included Faecalibacterium, Blautia, Akkermansia, and several Lactobacillus/Bifidobacterium species
  • This pattern was consistent across cardiac arrhythmia, epilepsy, and cancer cohorts

In the cognitive cohort, absence of dysbiosis tracked with preserved learning across ages.

  • The cognitive cohort included melatonin phenotyping, microbiome analyses, and exploratory immune/metabolite readouts
  • Subjects without dysbiosis showed preserved learning performance across age groups
  • The cognitive cohort was part of the age-spanning component of the study

Exploratory immunohistochemistry suggested melatonin-binding sites on bacterial membranes in approximately 15-17% of samples.

  • This was described as a 'novel observation of melatonin binding on bacterial membranes'
  • Melatonin-binding sites were observed on bacterial membranes in '~15-17% of samples'
  • This finding was detected in the cognitive cohort as part of exploratory immune/metabolite readouts
  • This observation is described as exploratory in nature

Gut mucosal melatonin concentrations are 10-400 times higher than plasma levels, indicating primarily local paracrine effects.

  • The paper states 'microbiota-melatonin crosstalk rely primarily on local paracrine effects within the gut mucosa (where melatonin concentrations are 10-400× plasma levels)'
  • Systemic chronotherapy conclusions depend on circulating melatonin amplitude and phase
  • Melatonin is produced at extrapineal sites, most notably in the gut
  • This distinction between local mucosal and systemic circulating melatonin is noted as a limitation for interpreting findings

Typical human gut commensals rarely secrete measurable melatonin in vitro; rather, their metabolites regulate host enterochromaffin serotonin/melatonin production.

  • Synthesized literature indicates gut bacteria do not directly produce melatonin in measurable amounts
  • Bacterial metabolites including SCFAs, lactate, and tryptophan derivatives regulate host enterochromaffin serotonin/melatonin production
  • This indirect regulatory mechanism rather than direct bacterial melatonin secretion is described as the primary pathway of microbiota-melatonin interaction

Melatonin's canonical actions are mediated by high-affinity GPCRs (MT1/MT2) and by NQO2, a cytosolic enzyme with a melatonin-binding site historically termed 'MT3'.

  • MT1 and MT2 are described as high-affinity GPCRs mediating canonical melatonin actions
  • NQO2 is described as 'a cytosolic enzyme with a melatonin-binding site (historically termed MT3)'
  • Melatonin is characterized as 'an indolic neuromodulator with putative oncostatic and proposed anti-inflammatory properties, primarily demonstrated in preclinical models'

Epilepsy exhibits circadian seizure patterns and tryptophan-metabolite signatures, with modest and heterogeneous responses to add-on melatonin treatment.

  • The epilepsy cohort comprised n=77 subjects aged 20-59 years
  • Circadian seizure patterns were identified in the epilepsy cohort
  • Tryptophan-metabolite signatures were detected in epilepsy subjects
  • Melatonin as add-on therapy showed 'modest and heterogeneous responses'

In arrhythmia models, dysbiosis, bile-acid remodelling, and autonomic/inflammatory tone align with melatonin-sensitive antiarrhythmic effects.

  • The arrhythmia cohort comprised n=111 subjects aged 46-75 years
  • Bile-acid remodelling was identified as part of the dysbiosis signature in arrhythmia patients
  • Autonomic and inflammatory tone changes were observed alongside dysbiosis in arrhythmia patients
  • These features were described as aligning with 'melatonin-sensitive antiarrhythmic effects'

Cancer cohorts showed broader dysbiosis consistent with melatonin's oncostatic actions.

  • Cancer cohort included stage III-IV solid cancers in patients aged 25-79 years
  • Cancer cohort showed broader dysbiosis compared to other disease groups
  • Findings were described as consistent with melatonin's oncostatic actions
  • Melatonin's oncostatic properties are characterized as 'putative' and 'primarily demonstrated in preclinical models'

Practical interventions identified for modulating the microbiota-tryptophan-melatonin axis include fiber-rich diets, light hygiene, and time-aware therapy.

  • Fiber-rich diets are recommended to drive SCFA production
  • Light hygiene is identified as a lever to modulate melatonin signaling
  • Time-aware therapy is recommended with indication-specific use of melatonin
  • These recommendations are based on the bidirectional interaction between gut microbiota and host melatonin

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Citation

Tavartkiladze A, Reiter R, Lou R, Kasradze D, Okrostsvaridze N, Revazishvili P, et al.. (2026). Melatonin Biosynthesis, Receptors, and the Microbiota-Tryptophan-Melatonin Axis: A Shared Dysbiosis Signature Across Cardiac Arrhythmias, Epilepsy, Malignant Proliferation, and Cognitive Trajectories.. International journal of molecular sciences. https://doi.org/10.3390/ijms27031361