YTHDF3 may be associated with MIRI and CFTR-related changes, with YTHDF3 overexpression aggravating myocardial ischemia-reperfusion injury by reducing CFTR expression, and changes in AMPK signalling also observed.
Key Findings
Results
In the GSE123342 dataset, 5444 differentially expressed mRNAs were identified, with CFTR significantly upregulated in myocardial infarction-associated conditions.
5444 differentially expressed mRNAs were identified from the GSE123342 dataset
CFTR was among the significantly upregulated genes
Correlation analysis revealed 6651 genes related to CFTR
WGCNA identified 120 hub genes, with the MEyellow module significantly associated with MIRI
Results
Hub genes identified through WGCNA were mainly enriched in ABC transporters and the AMPK pathway.
GO and KEGG enrichment analyses were performed on the 120 hub genes
Key enriched pathways included ABC transporters and the AMPK pathway
A protein-protein interaction network was constructed from the DEGs
The MEyellow module was identified as significantly associated with MIRI
Results
In the GSE6381 dataset, both CFTR and YTHDF3 showed differential expression, and ROC analysis showed preliminary group separation.
The GSE6381 dataset was used to examine core gene expression
Both CFTR and YTHDF3 demonstrated differential expression in this independent dataset
ROC curve analysis was performed as an exploratory assessment of group separation
The authors note ROC results represent preliminary rather than definitive diagnostic findings
Results
CFTR was found to be closely related to multiple transcription factors, including TP53, STAT3, and TFAP4.
A transcription factor regulatory network for CFTR was constructed using the KnockTF database
Key transcription factors identified included TP53, STAT3, and TFAP4
This network analysis provides insight into upstream regulatory mechanisms of CFTR in MIRI
Results
OGD/OGR treatment in AC16 cells decreased YTHDF3 expression and increased CFTR expression.
An oxygen-glucose deprivation/reoxygenation (OGD/OGR) model was established in AC16 human cardiomyocyte cells
OGD/OGR conditions led to a decrease in YTHDF3 expression
OGD/OGR conditions led to an increase in CFTR expression
These reciprocal expression changes suggest a regulatory relationship between YTHDF3 and CFTR under ischemia-reperfusion conditions
Results
YTHDF3 overexpression reduced CFTR expression and aggravated OGD/OGR-induced injury in AC16 cells, while additional CFTR overexpression partly attenuated these changes.
YTHDF3 overexpression was achieved using plasmid transfection in AC16 cells
YTHDF3 overexpression led to reduced cell viability and proliferation and increased apoptosis following OGD/OGR
YTHDF3 overexpression reduced CFTR expression
Co-overexpression of CFTR partly attenuated the injury aggravated by YTHDF3 overexpression
RIP-qPCR experiments examined the interaction between YTHDF3 and CFTR mRNA, and an actinomycin D assay assessed CFTR mRNA stability
Results
In a rat ischemia-reperfusion model, YTHDF3 overexpression increased myocardial infarct size and impaired cardiac function, whereas CFTR overexpression attenuated the injury associated with YTHDF3 overexpression.
In vivo experiments were conducted in a rat I/R model
YTHDF3 overexpression increased myocardial infarct size compared to controls
YTHDF3 overexpression was associated with impaired cardiac function
CFTR overexpression attenuated the myocardial injury caused by YTHDF3 overexpression in vivo
These in vivo findings corroborated the in vitro OGD/OGR cell model results
Results
CFTR knockdown aggravated OGD/OGR-induced cellular injury and was associated with changes in AMPK signalling.
CFTR knockdown experiments were performed in AC16 cells under OGD/OGR conditions
CFTR knockdown worsened cell injury parameters compared to controls
Changes in AMPK signalling were observed in association with CFTR knockdown
The authors note that the underlying mechanism of AMPK signalling changes still needs further validation
What This Means
This research suggests that two proteins — YTHDF3 and CFTR — play important roles in the heart damage that occurs when blood flow is restored after a heart attack, a process known as myocardial ischemia-reperfusion injury (MIRI). Using large gene expression datasets, the researchers identified CFTR as a notably upregulated gene in this condition and found that it interacts with YTHDF3, a protein involved in regulating how RNA messages are read in cells. When heart cells were deprived of oxygen and glucose and then reoxygenated (mimicking ischemia-reperfusion), YTHDF3 levels fell while CFTR levels rose. When YTHDF3 was artificially increased, CFTR levels dropped and cell damage worsened; adding back CFTR partially reversed this damage.
The researchers confirmed these findings in living rats: increasing YTHDF3 enlarged the area of heart damage and worsened heart function, while increasing CFTR protected against this effect. Reducing CFTR also made injury worse and was linked to changes in a key cellular energy-sensing pathway called AMPK signalling. The study also identified several transcription factors — including TP53 and STAT3 — that may regulate CFTR, adding another layer to the regulatory picture.
This research suggests that the balance between YTHDF3 and CFTR may influence how much damage the heart sustains during reperfusion therapy, which is the standard treatment for heart attacks. The AMPK pathway connection also points toward known cellular stress-response mechanisms. However, the authors emphasize these are preliminary findings, the exact molecular mechanisms remain to be fully validated, and further research is needed before these targets could be considered for therapeutic development.
Tang B, Zhu C, Wang H, Gao M, Li T. (2026). Potential Relationship Between YTHDF3 and CFTR in Myocardial Ischemia-Reperfusion Injury.. Journal of cellular and molecular medicine. https://doi.org/10.1111/jcmm.71240