Gut Microbiome

Short-term sleep restriction in humans alters diurnal circulating metabolite profiles, including those of microbial origin.

TL;DR

Sleep restriction alters diurnal circulating microbial and host-derived metabolite rhythms even under constant meal timing, composition, and calories, providing evidence that microbial metabolites are detectable in human blood and exhibit sleep-dependent rhythmicity.

Key Findings

Short-term sleep restriction significantly altered serum metabolite composition compared with normal sleep in healthy adults.

  • Randomized crossover design with 9 healthy adults completing two in-lab 24-hour blood sampling sessions
  • One condition involved 3 nights of normal sleep (8.5 hours/night) and the other 3 nights of sleep restriction (4.5 hours/night)
  • Blood samples were collected every 120 minutes (q120) over 24-hour periods
  • Meal timing and caloric intake were held constant across both conditions to isolate sleep effects
  • Serum metabolites were characterized using untargeted reverse-phase liquid chromatography-mass spectrometry

A total of 90 metabolites were identified, including 14 of microbial origin or derived from host metabolism of microbial products.

  • The 14 microbially-related metabolites included compounds such as butyrate and tryptophan derivatives
  • Metabolites included those derived from microbial products processed through host metabolism
  • Rhythmicity was assessed using empirical JTK_CYCLE analysis
  • The metabolites spanned microbial and host-derived categories

Butyrate and indole-3-propionic acid lost circadian rhythmicity under sleep restriction conditions.

  • Both butyrate and indole-3-propionic acid maintained rhythmicity under normal sleep (8.5 hours/night)
  • These microbe-derived metabolites lost their diurnal rhythmic patterns following 3 nights of sleep restriction (4.5 hours/night)
  • Butyrate is a short-chain fatty acid of microbial origin; indole-3-propionic acid is a tryptophan-derived microbial metabolite
  • Loss of rhythmicity occurred despite constant meal timing, composition, and caloric intake

New circadian rhythms emerged in kynurenine and lipid metabolism intermediates under sleep restriction.

  • Kynurenine, a tryptophan catabolite, gained rhythmicity under sleep restriction that was not present under normal sleep
  • Lipid metabolism intermediates also acquired new rhythmic patterns under sleep restriction
  • These emergent rhythms suggest sleep restriction reorganizes the timing of metabolic processes
  • The emergence of kynurenine rhythmicity is notable given kynurenine's role in immune and neurological function

Many metabolites maintained rhythmicity across both normal sleep and sleep restriction conditions.

  • While sleep restriction disrupted rhythms of several key compounds, a number of compounds maintained rhythmicity across both conditions
  • This suggests that sleep restriction selectively disrupts rather than globally abolishing circadian metabolite rhythms
  • The selective disruption occurred even under controlled conditions of constant meal timing, composition, and calories

Microbial metabolites detectable in human blood exhibit sleep-dependent rhythmicity, supporting links between host sleep patterns and gut microbial metabolism.

  • The study provides evidence that microbially-derived metabolites are detectable in human serum
  • These metabolites show diurnal variation that is influenced by sleep conditions
  • Sleep restriction altered these rhythms even when meal timing, composition, and caloric intake were held constant
  • Authors suggest microbial metabolites may serve as potential biomarkers or mediators of sleep loss-associated health risks

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Citation

Leone V, Frazier K, Kaur M, Chrisler E, Sidebottom A, Tai E, et al.. (2026). Short-term sleep restriction in humans alters diurnal circulating metabolite profiles, including those of microbial origin.. The Journal of clinical investigation. https://doi.org/10.1172/JCI189363