Sleep restriction alters diurnal circulating microbial and host-derived metabolite rhythms even under constant meal timing, composition, and calories, providing evidence that microbial metabolites are detectable in human blood and exhibit sleep-dependent rhythmicity.
Key Findings
Methods
Short-term sleep restriction significantly altered serum metabolite composition compared with normal sleep in healthy adults.
Randomized crossover design with 9 healthy adults completing two in-lab 24-hour blood sampling sessions
One condition involved 3 nights of normal sleep (8.5 hours/night) and the other 3 nights of sleep restriction (4.5 hours/night)
Blood samples were collected every 120 minutes (q120) over 24-hour periods
Meal timing and caloric intake were held constant across both conditions to isolate sleep effects
Serum metabolites were characterized using untargeted reverse-phase liquid chromatography-mass spectrometry
Results
A total of 90 metabolites were identified, including 14 of microbial origin or derived from host metabolism of microbial products.
The 14 microbially-related metabolites included compounds such as butyrate and tryptophan derivatives
Metabolites included those derived from microbial products processed through host metabolism
Rhythmicity was assessed using empirical JTK_CYCLE analysis
The metabolites spanned microbial and host-derived categories
Results
Butyrate and indole-3-propionic acid lost circadian rhythmicity under sleep restriction conditions.
Both butyrate and indole-3-propionic acid maintained rhythmicity under normal sleep (8.5 hours/night)
These microbe-derived metabolites lost their diurnal rhythmic patterns following 3 nights of sleep restriction (4.5 hours/night)
Butyrate is a short-chain fatty acid of microbial origin; indole-3-propionic acid is a tryptophan-derived microbial metabolite
Loss of rhythmicity occurred despite constant meal timing, composition, and caloric intake
Results
New circadian rhythms emerged in kynurenine and lipid metabolism intermediates under sleep restriction.
Kynurenine, a tryptophan catabolite, gained rhythmicity under sleep restriction that was not present under normal sleep
Lipid metabolism intermediates also acquired new rhythmic patterns under sleep restriction
These emergent rhythms suggest sleep restriction reorganizes the timing of metabolic processes
The emergence of kynurenine rhythmicity is notable given kynurenine's role in immune and neurological function
Results
Many metabolites maintained rhythmicity across both normal sleep and sleep restriction conditions.
While sleep restriction disrupted rhythms of several key compounds, a number of compounds maintained rhythmicity across both conditions
This suggests that sleep restriction selectively disrupts rather than globally abolishing circadian metabolite rhythms
The selective disruption occurred even under controlled conditions of constant meal timing, composition, and calories
Conclusions
Microbial metabolites detectable in human blood exhibit sleep-dependent rhythmicity, supporting links between host sleep patterns and gut microbial metabolism.
The study provides evidence that microbially-derived metabolites are detectable in human serum
These metabolites show diurnal variation that is influenced by sleep conditions
Sleep restriction altered these rhythms even when meal timing, composition, and caloric intake were held constant
Authors suggest microbial metabolites may serve as potential biomarkers or mediators of sleep loss-associated health risks
Leone V, Frazier K, Kaur M, Chrisler E, Sidebottom A, Tai E, et al.. (2026). Short-term sleep restriction in humans alters diurnal circulating metabolite profiles, including those of microbial origin.. The Journal of clinical investigation. https://doi.org/10.1172/JCI189363