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Syndromic Autism in Helsmoortel-Van der Aa Syndrome: From Clinical Suspicion to Genetic Diagnosis.

TL;DR

A 10-year-old boy with ASD and intellectual disability was diagnosed with Helsmoortel-Van der Aa syndrome via whole-exome sequencing after unremarkable karyotyping and chromosomal microarray analysis, identified by a heterozygous pathogenic de novo frameshift variant c.1239_1240del, p.(Gln414Valfs*25) in the ADNP gene.

Key Findings

Whole-exome sequencing identified a heterozygous pathogenic de novo frameshift variant in ADNP confirming Helsmoortel-Van der Aa syndrome diagnosis.

  • The specific variant identified was c.1239_1240del, p.(Gln414Valfs*25) in the ADNP gene
  • The variant was confirmed to be de novo (not inherited from parents)
  • The variant was heterozygous, consistent with the autosomal dominant inheritance pattern of HVDAS
  • Prior first-tier genetic testing including karyotyping and chromosomal microarray analysis (CMA) were both unremarkable

The patient presented with a broad multisystem phenotype including ASD, intellectual disability, and multiple organ system involvement.

  • The patient was a 10-year-old boy
  • Core features included autism spectrum disorder (ASD) and intellectual disability
  • Developmental features included delayed motor and language development
  • Additional findings included characteristic facial dysmorphism, early tooth eruption, endocrine abnormalities, EEG abnormalities, and urogenital findings

Helsmoortel-Van der Aa syndrome (HVDAS/ADNP syndrome) is a rare autosomal dominant neurodevelopmental disorder caused by heterozygous pathogenic variants in the ADNP gene.

  • HVDAS is classified as a form of syndromic autism, meaning ASD occurs as part of an identifiable genetic syndrome
  • The syndrome follows an autosomal dominant inheritance pattern
  • The condition is described as rare
  • Pathogenic variants in ADNP are the causative genetic mechanism

First-tier genetic testing was insufficient to identify the genetic etiology in this case of syndromic ASD.

  • Standard karyotyping returned unremarkable results
  • Chromosomal microarray analysis (CMA) also returned unremarkable results
  • Whole-exome sequencing was required to identify the causative variant
  • The case supports the use of comprehensive genetic evaluation when first-tier testing is unrevealing

The authors emphasize the importance of considering syndromic etiology in children with ASD accompanied by additional clinical features.

  • Key clinical indicators for syndromic etiology include developmental delay, dysmorphic features, neurological findings, or multisystem involvement
  • The case supports comprehensive genetic evaluation when first-tier testing is unrevealing
  • Recognizing syndromic autism is framed as clinically important for reaching a specific genetic diagnosis

What This Means

This research describes the case of a 10-year-old boy with autism spectrum disorder (ASD) and intellectual disability who was ultimately diagnosed with a rare genetic condition called Helsmoortel-Van der Aa syndrome (HVDAS). The boy had a wide range of symptoms beyond autism, including delays in motor and language development, unusual facial features, early tooth eruption, hormonal abnormalities, abnormal brain wave activity on EEG testing, and urinary/genital findings. Standard genetic tests — chromosome analysis and a test called chromosomal microarray — did not find anything abnormal. It was only through a more comprehensive test called whole-exome sequencing, which reads the protein-coding portions of a person's entire DNA, that the specific genetic mutation was found: a small deletion in a gene called ADNP that disrupts its normal function. This research suggests that when a child has autism along with other features such as developmental delays, distinctive physical features, neurological signs, or involvement of multiple body systems, doctors should consider the possibility that the autism is part of a broader genetic syndrome. In such cases, if routine genetic tests come back normal, more advanced testing like whole-exome sequencing may be necessary to find the underlying cause. Identifying the specific genetic diagnosis can be important for understanding the condition, informing families about recurrence risks, and potentially guiding care. HVDAS is a rare condition caused by changes in the ADNP gene, and this case adds to the medical literature describing its range of features. The findings highlight that a genetic cause of autism may be missed if clinicians rely only on standard first-line tests, and that a syndromic presentation — autism plus other medical findings — should prompt more thorough genetic investigation.

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Citation

Kılıçaslan F, Öz &, Carık C, Mutlu M, Gürler A. (2026). Syndromic Autism in Helsmoortel-Van der Aa Syndrome: From Clinical Suspicion to Genetic Diagnosis.. Developmental neurobiology. https://doi.org/10.1002/dneu.70070