Gut Microbiome

The gut microbiota composition is shaped by disease activity and individual treatment responses in patients with multiple sclerosis.

TL;DR

Treatment influences gut microbiota composition, and patients with active disease (CIS and treatment non-responders) share a similar gut microbiota profile and higher levels of molecules associated with microbial translocation, suggesting higher permeability of their gut barrier leading to pro-inflammatory tuning of their immune system.

Key Findings

Patients with clinically isolated syndrome (CIS) and treatment non-responders (NR) had significantly different alpha and beta diversity compared to healthy controls.

  • Alpha and beta diversity differences were observed in both CIS patients and treatment non-responders (NR) relative to healthy controls (HC).
  • This pattern was present across multiple treatment groups including IFN-β and fingolimod.
  • The study used 16S rRNA sequencing to analyze gut microbiota composition.
  • The cross-sectional design compared treatment-naïve patients and those on disease-modifying therapies to HC.

Patients treated with cladribine had significantly different alpha and beta diversity regardless of treatment outcome.

  • Unlike IFN-β and fingolimod groups where diversity differences were linked to treatment response, cladribine-treated individuals showed diversity differences irrespective of whether they were responders or non-responders.
  • This suggests cladribine has a distinct effect on gut microbiota composition compared to other disease-modifying therapies.
  • Gut microbiota was analyzed using 16S rRNA sequencing.

The main differences in bacterial abundances in CIS and non-responders involved bacteria that produce short-chain fatty acids.

  • Short-chain fatty acid (SCFA)-producing bacteria were identified as the primary taxa differing between active disease groups (CIS and NR) and healthy controls.
  • Differences in SCFA-producing bacteria were shared between CIS patients and treatment non-responders, suggesting a common microbiota profile in active disease.
  • Short-chain fatty acids are known to play roles in immune regulation and gut barrier integrity.

CIS patients and treatment non-responders had significantly higher serum levels of lipopolysaccharide-binding protein (LBP) and mannose-binding lectin (MBL) compared to healthy controls.

  • Elevated LBP and MBL levels suggest compromised gut barrier function in patients with active MS disease.
  • Higher levels of these molecules are interpreted as evidence of increased microbial translocation in CIS and NR patients.
  • LBP and MBL are biomarkers associated with microbial translocation and inflammation.
  • Serum biomarker levels were analyzed alongside gut microbiota composition in the same cohort.

Active MS disease (CIS and treatment non-response) is associated with a pro-inflammatory immune tuning linked to gut barrier permeability.

  • Similar profiles of gut microbiota and higher levels of microbial translocation markers were observed in both CIS patients and treatment non-responders.
  • The authors conclude this shared profile reflects 'higher permeability of their gut barrier leading to pro-inflammatory tuning of their immune system.'
  • This finding connects gut barrier dysfunction to disease activity and treatment failure in MS.
  • The study included treatment-naïve patients (CIS) and patients on IFN-β, fingolimod, or cladribine, stratified by treatment response.

Disease-modifying treatment influences gut microbiota composition in MS patients.

  • The study compared gut microbiota across treatment groups: treatment-naïve (CIS), IFN-β, fingolimod, and cladribine, relative to healthy controls.
  • Different treatments were associated with distinct microbiota profiles, with cladribine showing the most pronounced effect independent of treatment response.
  • Both IFN-β and fingolimod treatment groups showed microbiota differences that were associated with treatment response status.
  • 16S rRNA sequencing was used for microbiota characterization in this cross-sectional study.

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Citation

Ticha V, Coufal S, Jiraskova Zakostelska Z, Thon T, Roubalova R, Hrncir T, et al.. (2026). The gut microbiota composition is shaped by disease activity and individual treatment responses in patients with multiple sclerosis.. Frontiers in immunology. https://doi.org/10.3389/fimmu.2025.1681342