The CIPO microbiota exhibited reduced microbial diversity with dominance of Proteobacteria and altered metabolic function, and FMT from a healthy control improved microbiota profile, intestinal transit and bowel distension in both CIPO mice and a selected CIPO patient, in whom a marked clinical improvement was sustained for 8 years.
Key Findings
Results
The CIPO microbiota exhibited reduced microbial diversity compared to healthy controls.
CIPO patients (n=14) and healthy controls (HC, n=12) were recruited from Italy and Canada.
Microbiota profiles were assessed by 16S rRNA sequencing.
The CIPO microbiota showed dominance of Proteobacteria relative to healthy controls.
Metabolic functions were also altered in the CIPO microbiota as assessed by PICRUSt.
Results
Germ-free mice colonized with CIPO microbiota developed marked bowel distension and slow intestinal transit.
Germ-free NIH Swiss mice were colonized with either HC or CIPO microbiota.
Intestinal transit and bowel distension were assessed by videofluoroscopy and computed tomography (CT).
Mice colonized with CIPO microbiota developed marked bowel distension compared to HC microbiota-colonized mice.
Slow intestinal transit was observed in CIPO microbiota-colonized mice.
Results
CIPO microbiota-colonized mice showed altered expression of multiple genes related to immunity, the intestinal barrier, and neuromuscular function.
Gene expression was assessed using NanoString® technology.
Altered gene expression was observed across categories including immunity, intestinal barrier function, and neuromuscular function.
These changes were associated with the bowel distension and slow intestinal transit phenotype observed in CIPO microbiota-colonized mice.
Results
FMT from a healthy control improved microbiota profile, intestinal transit, and bowel distension in CIPO microbiota-colonized mice.
FMT was performed using fecal material from a healthy control donor.
Following FMT, mice showed improvement in intestinal transit as assessed by videofluoroscopy.
Bowel distension was reduced following FMT as assessed by CT.
The microbiota profile of CIPO mice improved following FMT from a healthy control.
Results
A single CIPO patient treated with FMT from a healthy control experienced marked clinical improvement sustained for 8 years.
The FMT was performed on a selected CIPO patient.
Clinical improvement included improvement in the microbiota profile following FMT.
The clinical improvement was described as 'marked' and was sustained for 8 years post-FMT.
This finding in the patient was consistent with the results observed in the mouse model.
Results
The gut microbiota plays a functional role in disease expression of CIPO, as demonstrated by the germ-free mouse colonization model.
Germ-free NIH Swiss mice were used to isolate the effect of the microbiota from other host factors.
Colonization with CIPO microbiota was sufficient to recapitulate key features of CIPO including bowel distension and slow transit.
This causal relationship supports the microbiota as a contributor to CIPO disease expression rather than merely an association.
The findings support the use of microbiota-directed therapies to induce clinical improvement in CIPO patients.
De Palma G, Costanzini A, Mohan V, Sidani S, Saqib Z, Pigrau M, et al.. (2026). The role of gut microbiota in chronic intestinal pseudo-obstruction: exploring fecal microbiota transplantation as a treatment option.. Gut microbes. https://doi.org/10.1080/19490976.2025.2610597